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LYPD5 LY6/PLAUR domain containing 5 [ Sus scrofa (pig) ]

Gene ID: 100626406, updated on 17-Aug-2024

Summary

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Official Symbol
LYPD5provided by VGNC
Official Full Name
LY6/PLAUR domain containing 5provided by VGNC
Primary source
VGNC:VGNC:89913
See related
Ensembl:ENSSSCG00000003073
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See LYPD5 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (50607723..50612376, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (46468646..46470740, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene SMG9 nonsense mediated mRNA decay factor Neighboring gene uncharacterized LOC102166702 Neighboring gene potassium calcium-activated channel subfamily N member 4 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene uncharacterized LOC110260998

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ly6/PLAUR domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    50607723..50612376 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005655948.3 → XP_005656005.2  ly6/PLAUR domain-containing protein 5

    UniProtKB/TrEMBL
    A0A8D0LVW7, A0A8D1VID8
    Related
    ENSSSCP00000003327.5, ENSSSCT00000003410.5
    Conserved Domains (1) summary
    pfam00021
    Location:141 → 220
    UPAR_LY6; u-PAR/Ly-6 domain
Nucleotide Protein
Heading Accession and Version

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