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NKD1 NKD inhibitor of WNT signaling pathway 1 [ Sus scrofa (pig) ]

Gene ID: 100626194, updated on 17-Aug-2024

Summary

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Official Symbol
NKD1provided by VGNC
Official Full Name
NKD inhibitor of WNT signaling pathway 1provided by VGNC
Primary source
VGNC:VGNC:90759
See related
Ensembl:ENSSSCG00000039875
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 10.8), lung (RPKM 10.8) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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See NKD1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (34223888..34319584, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003538745.1 (8856..18235, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene nucleotide binding oligomerization domain containing 2 Neighboring gene sorting nexin 20 Neighboring gene bromodomain containing 7 Neighboring gene adenylate cyclase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein naked cuticle homolog 1
Names
NKD1, WNT signaling pathway inhibitor
naked cuticle homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    34223888..34319584 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021094196.1 → XP_020949855.1  protein naked cuticle homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A287A175, A0A4X1U333, A0A8D1T0Y9
    Related
    ENSSSCP00000037506.1, ENSSSCT00000046964.2

  2. XM_021094197.1 → XP_020949856.1  protein naked cuticle homolog 1 isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials