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FCSK fucose kinase [ Sus scrofa (pig) ]

Gene ID: 100625448, updated on 17-Aug-2024

Summary

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Official Symbol
FCSKprovided by VGNC
Official Full Name
fucose kinaseprovided by VGNC
Primary source
VGNC:VGNC:88075
See related
Ensembl:ENSSSCG00000025425
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
FUK
Expression
Ubiquitous expression in kidney (RPKM 10.0), ovary (RPKM 6.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See FCSK in Genome Data Viewer
Location:
chromosome: 6
Exon count:
24
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (13471771..13492581)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003538963.1 (21461..37269, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 19A Neighboring gene uncharacterized LOC102163267 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 2 Neighboring gene component of oligomeric golgi complex 4 Neighboring gene splicing factor 3b subunit 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fucokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GDP-L-fucose salvage IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
L-fucose kinase
Names
fucokinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    13471771..13492581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021093807.1 → XP_020949466.1  L-fucose kinase

    UniProtKB/TrEMBL
    A0A480HE97, A0A8D0JP87, A0A8D0QWI5, A0A8D1HMK8, I3LTC2
    Related
    ENSSSCP00000036709.2, ENSSSCT00000046388.2
    Conserved Domains (2) summary
    pfam07959
    Location:97 → 495
    Fucokinase; L-fucokinase
    cl27720
    Location:712 → 996
    GHMP_kinases_N; GHMP kinases N terminal domain

  2. XM_021093806.1 → XP_020949465.1  L-fucose kinase

    UniProtKB/TrEMBL
    A0A480HE97, A0A8D0JP87, A0A8D0QWI5, A0A8D1HMK8, I3LTC2
    Related
    ENSSSCP00000055532.3, ENSSSCT00000065744.3
    Conserved Domains (2) summary
    pfam07959
    Location:97 → 495
    Fucokinase; L-fucokinase
    cl27720
    Location:712 → 996
    GHMP_kinases_N; GHMP kinases N terminal domain

RNA

  1. XR_002344515.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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