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NOP53 NOP53 ribosome biogenesis factor [ Sus scrofa (pig) ]

Gene ID: 100624752, updated on 17-Aug-2024

Summary

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Official Symbol
NOP53provided by VGNC
Official Full Name
NOP53 ribosome biogenesis factorprovided by VGNC
Primary source
VGNC:VGNC:90821
See related
Ensembl:ENSSSCG00000022774
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
GLTSCR2
Expression
Ubiquitous expression in ovary (RPKM 117.4), spleen (RPKM 106.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See NOP53 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (53443453..53451707)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (48973573..48982147)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene BRD4 interacting chromatin remodeling complex associated protein Neighboring gene EH domain containing 2 Neighboring gene selenoprotein W Neighboring gene cone-rod homeobox

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5S rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal large subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: glioma tumor suppressor candidate region gene 2 protein
Names
glioma tumor suppressor candidate region gene 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    53443453..53451707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021094646.1 → XP_020950305.1  LOW QUALITY PROTEIN: glioma tumor suppressor candidate region gene 2 protein

    UniProtKB/TrEMBL
    A0A480VI14, A0A8D0MC18
    Related
    ENSSSCP00000028183.3, ENSSSCT00000025029.4
    Conserved Domains (1) summary
    pfam07767
    Location:59 → 454
    Nop53; Nop53 (60S ribosomal biogenesis)
Nucleotide Protein
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