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GRIK1 glutamate ionotropic receptor kainate type subunit 1 [ Sus scrofa (pig) ]

Gene ID: 100624513, updated on 17-Aug-2024

Summary

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Official Symbol
GRIK1provided by VGNC
Official Full Name
glutamate ionotropic receptor kainate type subunit 1provided by VGNC
Primary source
VGNC:VGNC:88677
See related
Ensembl:ENSSSCG00000025119
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See GRIK1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
22
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (192877707..193296954, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (203411219..203897606, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene MAP3K7 C-terminal like Neighboring gene BTB domain and CNC homolog 1 Neighboring gene 60S ribosomal protein L6 pseudogene Neighboring gene TOX high mobility group box family member 4 pseudogene Neighboring gene claudin 17 Neighboring gene claudin 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables kainate selective glutamate receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic transmission, glutamatergic IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of kainate selective glutamate receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate receptor ionotropic, kainate 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    192877707..193296954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005657138.3 → XP_005657195.1  glutamate receptor ionotropic, kainate 1 isoform X2

    UniProtKB/TrEMBL
    A0A286ZXH5, A0A8D0ZAJ0, A0A8D1GCL4, A0A8D1VSW3
    Related
    ENSSSCP00000036341.1, ENSSSCT00000055366.3
    Conserved Domains (4) summary
    pfam00060
    Location:562 → 831
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:53 → 396
    ANF_receptor; Receptor family ligand binding region
    cl10011
    Location:35 → 415
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
    cl21456
    Location:431 → 800
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

  2. XM_021070896.1 → XP_020926555.1  glutamate receptor ionotropic, kainate 1 isoform X7

    UniProtKB/TrEMBL
    A0A8D1BZ71, A0A8D1GJY1
    Conserved Domains (2) summary
    cl10011
    Location:1 → 359
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
    cl21456
    Location:375 → 744
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

  3. XM_021070893.1 → XP_020926552.1  glutamate receptor ionotropic, kainate 1 isoform X1

    UniProtKB/TrEMBL
    A0A480DG68, A0A4X1U9Y1, A0A8D1GCL4, A0A8D1VSW3
    Conserved Domains (2) summary
    cl10011
    Location:35 → 430
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
    cl21456
    Location:446 → 815
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

  4. XM_003483349.4 → XP_003483397.1  glutamate receptor ionotropic, kainate 1 isoform X5

    UniProtKB/TrEMBL
    A0A480ZRX9, A0A8D1VR70
    Conserved Domains (4) summary
    pfam00060
    Location:562 → 831
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:53 → 396
    ANF_receptor; Receptor family ligand binding region
    cl10011
    Location:35 → 415
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
    cl21456
    Location:431 → 800
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

  5. XM_021070894.1 → XP_020926553.1  glutamate receptor ionotropic, kainate 1 isoform X3

    UniProtKB/TrEMBL
    A0A8D0Z6L8, A0A8D1VRP7, I3LT35
    Related
    ENSSSCP00000027279.3, ENSSSCT00000028121.4
    Conserved Domains (2) summary
    cl10011
    Location:35 → 430
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
    cl21456
    Location:446 → 815
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

  6. XM_021070895.1 → XP_020926554.1  glutamate receptor ionotropic, kainate 1 isoform X6

    UniProtKB/TrEMBL
    A0A287ADH8, A0A8D1GK69, A0A8D1VS17
    Related
    ENSSSCP00000041887.3, ENSSSCT00000045911.3
    Conserved Domains (2) summary
    cl10011
    Location:35 → 415
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
    cl21456
    Location:431 → 800
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

  7. XM_003358905.5 → XP_003358953.2  glutamate receptor ionotropic, kainate 1 isoform X4

    UniProtKB/TrEMBL
    A0A286ZZZ7, A0A4X1U9Z3, A0A8D0IEX9, A0A8D1GK69, A0A8D1VS17
    Related
    ENSSSCP00000037088.2, ENSSSCT00000055117.3
    Conserved Domains (4) summary
    pfam00060
    Location:577 → 846
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:53 → 396
    ANF_receptor; Receptor family ligand binding region
    cl10011
    Location:35 → 430
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
    cl21456
    Location:446 → 815
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

  8. XM_021070898.1 → XP_020926557.1  glutamate receptor ionotropic, kainate 1 isoform X9

    UniProtKB/TrEMBL
    A0A4X1U9Y6, A0A5G2RBP6, A0A8D0P068
    Conserved Domains (2) summary
    cl10011
    Location:35 → 430
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
    cl21456
    Location:446 → 711
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

  9. XM_021070897.1 → XP_020926556.1  glutamate receptor ionotropic, kainate 1 isoform X8

    UniProtKB/TrEMBL
    A0A4X1U9Y6, A0A5G2RBP6, A0A8D0P068
    Conserved Domains (2) summary
    cl10011
    Location:35 → 430
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
    cl21456
    Location:446 → 710
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
Nucleotide Protein
Heading Accession and Version

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