U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TNRC6C trinucleotide repeat containing adaptor 6C [ Sus scrofa (pig) ]

Gene ID: 100624184, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
TNRC6Cprovided by VGNC
Official Full Name
trinucleotide repeat containing adaptor 6Cprovided by VGNC
Primary source
VGNC:VGNC:94294
See related
Ensembl:ENSSSCG00000034373
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 4.2), spleen (RPKM 4.0) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TNRC6C in Genome Data Viewer
Location:
chromosome: 12
Exon count:
23
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (3847522..3939054, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003541002.2 (42934..103111)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110255960 Neighboring gene synaptogyrin 2 Neighboring gene transmembrane channel like 8 Neighboring gene transmembrane channel like 6 Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene uncharacterized LOC102162292 Neighboring gene uncharacterized LOC102162206

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
trinucleotide repeat-containing gene 6C protein
Names
trinucleotide repeat containing 6C

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    3847522..3939054 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021066533.1 → XP_020922192.1  trinucleotide repeat-containing gene 6C protein isoform X3

    UniProtKB/TrEMBL
    A0A8D0VGZ8
    Conserved Domains (6) summary
    cd12713
    Location:1743 → 1825
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1173 → 1210
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:1039 → 1170
    Ago_hook; Argonaute hook
    pfam12938
    Location:1252 → 1479
    M_domain; M domain of GW182
    pfam16608
    Location:1488 → 1742
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cl26303
    Location:791 → 971
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4

  2. XM_021066531.1 → XP_020922190.1  trinucleotide repeat-containing gene 6C protein isoform X1

    UniProtKB/TrEMBL
    A0A8D1X9C8
    Related
    ENSSSCP00000038345.3, ENSSSCT00000057633.3
    Conserved Domains (6) summary
    cd12713
    Location:1781 → 1863
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1173 → 1210
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:1039 → 1170
    Ago_hook; Argonaute hook
    pfam12938
    Location:1252 → 1479
    M_domain; M domain of GW182
    pfam16608
    Location:1488 → 1780
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cl26303
    Location:791 → 971
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4

  3. XM_021066532.1 → XP_020922191.1  trinucleotide repeat-containing gene 6C protein isoform X2

    UniProtKB/TrEMBL
    A0A8D1X9C8
    Conserved Domains (6) summary
    cd12713
    Location:1775 → 1857
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1173 → 1210
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:1039 → 1170
    Ago_hook; Argonaute hook
    pfam12938
    Location:1252 → 1473
    M_domain; M domain of GW182
    pfam16608
    Location:1482 → 1774
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cl26303
    Location:791 → 971
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4

  4. XM_021066535.1 → XP_020922194.1  trinucleotide repeat-containing gene 6C protein isoform X5

    UniProtKB/TrEMBL
    A0A8D1X9C8
    Conserved Domains (5) summary
    cd12713
    Location:1709 → 1791
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1101 → 1138
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam12938
    Location:1180 → 1407
    M_domain; M domain of GW182
    pfam16608
    Location:1416 → 1708
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cl26303
    Location:791 → 971
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4

  5. XM_021066536.1 → XP_020922195.1  trinucleotide repeat-containing gene 6C protein isoform X6

    UniProtKB/TrEMBL
    A0A8D0VH29
    Conserved Domains (6) summary
    cd12713
    Location:1682 → 1764
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1173 → 1210
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:1039 → 1170
    Ago_hook; Argonaute hook
    pfam12938
    Location:1252 → 1380
    M_domain; M domain of GW182
    pfam16608
    Location:1389 → 1681
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cl26303
    Location:791 → 971
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4

  6. XM_021066534.1 → XP_020922193.1  trinucleotide repeat-containing gene 6C protein isoform X4

    UniProtKB/TrEMBL
    A0A8D0VH08
    Conserved Domains (6) summary
    cd12713
    Location:1732 → 1814
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1173 → 1210
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:1039 → 1170
    Ago_hook; Argonaute hook
    pfam12938
    Location:1252 → 1430
    M_domain; M domain of GW182
    pfam16608
    Location:1439 → 1731
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cl26303
    Location:791 → 971
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4

  7. XM_021066537.1 → XP_020922196.1  trinucleotide repeat-containing gene 6C protein isoform X7

    UniProtKB/TrEMBL
    A0A8D0VH29
    Conserved Domains (6) summary
    cd12713
    Location:1644 → 1726
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1173 → 1210
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:1039 → 1170
    Ago_hook; Argonaute hook
    pfam12938
    Location:1252 → 1380
    M_domain; M domain of GW182
    pfam16608
    Location:1389 → 1643
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cl26303
    Location:791 → 971
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.