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AIF1L allograft inflammatory factor 1 like [ Sus scrofa (pig) ]

Gene ID: 100624075, updated on 17-Aug-2024

Summary

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Official Symbol
AIF1Lprovided by VGNC
Official Full Name
allograft inflammatory factor 1 likeprovided by VGNC
Primary source
VGNC:VGNC:103022
See related
Ensembl:ENSSSCG00000034178
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in kidney (RPKM 109.0), mixtures (RPKM 19.6) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See AIF1L in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (271075376..271099984)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (305102354..305127760)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene fibrinogen C domain containing 1 Neighboring gene uncharacterized LOC106509275 Neighboring gene laminin subunit gamma 3 Neighboring gene nucleoporin 214 Neighboring gene uncharacterized LOC110256424 Neighboring gene family with sequence similarity 78 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ruffle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ruffle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: allograft inflammatory factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    271075376..271099984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003353688.4 → XP_003353736.2  LOW QUALITY PROTEIN: allograft inflammatory factor 1-like

    UniProtKB/TrEMBL
    A0A287AWY3
    Related
    ENSSSCP00000048378.2, ENSSSCT00000066133.2
    Conserved Domains (1) summary
    cl25352
    Location:47 → 115
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version

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