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SBNO2 strawberry notch homolog 2 [ Sus scrofa (pig) ]

Gene ID: 100623993, updated on 17-Aug-2024

Summary

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Official Symbol
SBNO2provided by VGNC
Official Full Name
strawberry notch homolog 2provided by VGNC
Primary source
VGNC:VGNC:92597
See related
Ensembl:ENSSSCG00000030042
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 12.5), lung (RPKM 9.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SBNO2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
32
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (77278059..77320371)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (77677279..77693056, complement)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene ATP synthase F1 subunit delta Neighboring gene CACN subunit beta associated regulatory protein Neighboring gene CACN subunit beta associated regulatory protein Neighboring gene serine/threonine kinase 11 Neighboring gene glutathione peroxidase 4 Neighboring gene RNA polymerase II, I and III subunit E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein strawberry notch homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    77278059..77320371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021084268.1 → XP_020939927.1  LOW QUALITY PROTEIN: protein strawberry notch homolog 2

    UniProtKB/TrEMBL
    A0A8D1UKT9
    Related
    ENSSSCP00000026501.4, ENSSSCT00000022580.4
    Conserved Domains (2) summary
    pfam13871
    Location:751 → 1029
    Helicase_C_4; C-terminal domain on Strawberry notch homolog
    pfam13872
    Location:236 → 524
    AAA_34; P-loop containing NTP hydrolase pore-1
Nucleotide Protein
Heading Accession and Version

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