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DDX52 DExD-box helicase 52 [ Sus scrofa (pig) ]

Gene ID: 100623826, updated on 17-Aug-2024

Summary

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Official Symbol
DDX52provided by VGNC
Official Full Name
DExD-box helicase 52provided by VGNC
Primary source
VGNC:VGNC:87229
See related
Ensembl:ENSSSCG00000021275
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 11.4), spleen (RPKM 6.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See DDX52 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (39072310..39095558, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (40713951..40739656, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene transcriptional adaptor 2A Neighboring gene dual specificity phosphatase 14 Neighboring gene synergin gamma Neighboring gene HNF1 homeobox B Neighboring gene uncharacterized LOC110256041 Neighboring gene uncharacterized LOC110256042

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX52
Names
DEAD-box helicase 52

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    39072310..39095558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013989946.2 → XP_013845400.1  probable ATP-dependent RNA helicase DDX52

    UniProtKB/TrEMBL
    A0A4X1T487, A0A8D1AIB7, A0A8D1X1X7, I3LJA0
    Related
    ENSSSCP00000024158.2, ENSSSCT00000024730.4
    Conserved Domains (3) summary
    PRK11192
    Location:161 → 599
    PRK11192; ATP-dependent RNA helicase SrmB; Provisional
    pfam00271
    Location:398 → 507
    Helicase_C; Helicase conserved C-terminal domain
    cl21455
    Location:169 → 375
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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