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CLEC1B C-type lectin domain family 1 member B [ Sus scrofa (pig) ]

Gene ID: 100623580, updated on 17-Aug-2024

Summary

Official Symbol
CLEC1Bprovided by VGNC
Official Full Name
C-type lectin domain family 1 member Bprovided by VGNC
Primary source
VGNC:VGNC:86751
See related
Ensembl:ENSSSCG00000000650
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in spleen (RPKM 4.8), lung (RPKM 2.1) and 1 other tissue See more
Orthologs
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Genomic context

See CLEC1B in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (61889874..61896964, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (64722282..64804288, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 1 member A Neighboring gene C-type lectin domain containing 9A Neighboring gene C-type lectin domain family 12 member B Neighboring gene C-type lectin domain family 12 member A

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General protein information

Preferred Names
C-type lectin domain family 1 member B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001315794.1NP_001302723.1  C-type lectin domain family 1 member B

    Status: PROVISIONAL

    Source sequence(s)
    KJ786417
    UniProtKB/TrEMBL
    A0A076KXE4, A0A8D0LXQ5, A0A8D0PM04, A0A8D1MNE9
    Related
    ENSSSCP00000025784.2, ENSSSCT00000026674.4
    Conserved Domains (1) summary
    cd03593
    Location:99215
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    61889874..61896964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021091095.1XP_020946754.1  C-type lectin domain family 1 member B isoform X1

    UniProtKB/TrEMBL
    A0A8D0XUJ1, I3LNV9
    Conserved Domains (1) summary
    cd03593
    Location:66182
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)