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LYRM9 LYR motif containing 9 [ Sus scrofa (pig) ]

Gene ID: 100623359, updated on 17-Aug-2024

Summary

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Official Symbol
LYRM9provided by VGNC
Official Full Name
LYR motif containing 9provided by VGNC
Primary source
VGNC:VGNC:99011
See related
Ensembl:ENSSSCG00000032450
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in heart (RPKM 7.1), ovary (RPKM 6.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See LYRM9 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (44271407..44289687, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (46118407..46136659, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene galectin 9 Neighboring gene nitric oxide synthase 2 Neighboring gene uncharacterized LOC110256063 Neighboring gene nemo like kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
LYR motif-containing protein 9
Names
UPF0631 protein C17orf108 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    44271407..44289687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003358165.4 → XP_003358213.1  LYR motif-containing protein 9 isoform X2

    See identical proteins and their annotated locations for XP_003358213.1

    UniProtKB/TrEMBL
    A0A4X1TR76, A0A8D0Y273, A0A8D1HUC2, A0A8W4FJA3
    Related
    ENSSSCP00000079305.1, ENSSSCT00000105040.1
    Conserved Domains (1) summary
    cd20269
    Location:13 → 73
    Complex1_LYR_LYRM9; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 9 (LYRM9) and similar proteins

  2. XM_005669086.3 → XP_005669143.1  LYR motif-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A287BIK1, A0A8D0TRQ8, A0A8D0Y253, A0A8D1HR18
    Related
    ENSSSCP00000055894.2, ENSSSCT00000050331.3
    Conserved Domains (1) summary
    pfam13232
    Location:36 → 95
    Complex1_LYR_1; Complex1_LYR-like
Nucleotide Protein
Heading Accession and Version

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