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TKTL1 transketolase like 1 [ Sus scrofa (pig) ]

Gene ID: 100622411, updated on 17-Aug-2024

Summary

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Official Symbol
TKTL1provided by VGNC
Official Full Name
transketolase like 1provided by VGNC
Primary source
VGNC:VGNC:94009
See related
Ensembl:ENSSSCG00000029443
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Restricted expression toward ovary (RPKM 72.5) See more
Orthologs
human mouse all
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Genomic context

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See TKTL1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (124840072..124867313)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003541302.1 (2245..24408, complement)

Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene methyl-CpG binding protein 2 Neighboring gene medium-wave-sensitive opsin Neighboring gene testis expressed 28 Neighboring gene collagen alpha-1(III) chain-like Neighboring gene emerin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transketolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transketolase-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

    Range
    124840072..124867313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021080743.1 → XP_020936402.1  transketolase-like protein 1

    UniProtKB/TrEMBL
    A0A4X1TES9, A0A8D1G542, I3L954
    Related
    ENSSSCP00000020565.2, ENSSSCT00000031565.4
    Conserved Domains (1) summary
    PRK05899
    Location:17 → 591
    PRK05899; transketolase; Reviewed

  2. XM_021080741.1 → XP_020936400.1  transketolase-like protein 1

    UniProtKB/TrEMBL
    A0A4X1TES9, A0A8D1G542, I3L954
    Conserved Domains (1) summary
    PRK05899
    Location:17 → 591
    PRK05899; transketolase; Reviewed
Nucleotide Protein
Heading Accession and Version

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