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RRP15 ribosomal RNA processing 15 homolog [ Sus scrofa (pig) ]

Gene ID: 100622345, updated on 17-Aug-2024

Summary

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Official Symbol
RRP15provided by VGNC
Official Full Name
ribosomal RNA processing 15 homologprovided by VGNC
Primary source
VGNC:VGNC:96036
See related
Ensembl:ENSSSCG00000027846
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 3.4), heart (RPKM 2.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RRP15 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 10 NC_010452.4 (8253798..8296143)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 10 NC_010452.3 (10300927..10339246)

Chromosome 10 - NC_010452.4Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 17 Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene transforming growth factor beta 2 Neighboring gene uncharacterized LOC106504448

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of LSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of preribosome, large subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RRP15-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010452.4 Reference Sscrofa11.1 Primary Assembly

    Range
    8253798..8296143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005653761.3 → XP_005653818.1  RRP15-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8D1HSZ9, I3LCG6
    Conserved Domains (1) summary
    pfam07890
    Location:107 → 220
    Rrp15p; Rrp15p

  2. XM_013978068.2 → XP_013833522.1  RRP15-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8D1HSZ9, I3LCG6
    Conserved Domains (1) summary
    pfam07890
    Location:107 → 220
    Rrp15p; Rrp15p

  3. XM_021064300.1 → XP_020919959.1  RRP15-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8D1HSZ9, I3LCG6
    Conserved Domains (1) summary
    pfam07890
    Location:107 → 220
    Rrp15p

  4. XM_005653760.3 → XP_005653817.1  RRP15-like protein isoform X1

    UniProtKB/TrEMBL
    A0A287AR18, A0A480T6W5, A0A4X1TN88, A0A8D2C2P2
    Related
    ENSSSCP00000046511.2, ENSSSCT00000053121.3
    Conserved Domains (1) summary
    pfam07890
    Location:107 → 220
    Rrp15p; Rrp15p
Nucleotide Protein
Heading Accession and Version

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