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TSFM Ts translation elongation factor, mitochondrial [ Sus scrofa (pig) ]

Gene ID: 100622167, updated on 17-Aug-2024

Summary

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Official Symbol
TSFMprovided by VGNC
Official Full Name
Ts translation elongation factor, mitochondrialprovided by VGNC
Primary source
VGNC:VGNC:94486
See related
Ensembl:ENSSSCG00000037767
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 30.0), heart (RPKM 27.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TSFM in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (23073087..23087029)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003537551.1 (217..3016, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene cytochrome P450 family 27 subfamily B member 1 Neighboring gene methyltransferase 1, tRNA methylguanosine Neighboring gene EEF1A lysine methyltransferase 3 Neighboring gene advillin Neighboring gene CTD small phosphatase 2 Neighboring gene microRNA mir-26a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongation factor Ts, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    23073087..23087029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021091898.1 → XP_020947557.1  elongation factor Ts, mitochondrial

    UniProtKB/TrEMBL
    A0A5G2QFS9, A0A8D1KUS8
    Related
    ENSSSCP00000060895.1, ENSSSCT00000086159.2
    Conserved Domains (1) summary
    cl27004
    Location:61 → 327
    EF_TS; Elongation factor TS
Nucleotide Protein
Heading Accession and Version

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