U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERCC6L ERCC excision repair 6 like, spindle assembly checkpoint helicase [ Sus scrofa (pig) ]

Gene ID: 100622071, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
ERCC6Lprovided by VGNC
Official Full Name
ERCC excision repair 6 like, spindle assembly checkpoint helicaseprovided by VGNC
Primary source
VGNC:VGNC:97984
See related
Ensembl:ENSSSCG00000021834
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 4.3), spleen (RPKM 1.6) and 6 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ERCC6L in Genome Data Viewer
Location:
chromosome: X
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (58087216..58117942, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (65796640..65827382, complement)

Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene NHS like 2 Neighboring gene retrotransposon Gag like 5 Neighboring gene peptidylprolyl cis/trans isomerase, NIMA-interacting 4 Neighboring gene cofilin-1 pseudogene Neighboring gene ribosomal protein S4 X-linked Neighboring gene Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA translocase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA excision repair protein ERCC-6-like
Names
excision repair cross-complementing rodent repair deficiency, complementation group 6-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

    Range
    58087216..58117942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003360364.4 → XP_003360412.2  DNA excision repair protein ERCC-6-like

    UniProtKB/TrEMBL
    A0A4X1W2Y8, A0A8D0XB65, A0A8D1EGL5, I3LFY4
    Related
    ENSSSCP00000022977.2, ENSSSCT00000023457.3
    Conserved Domains (1) summary
    COG0553
    Location:25 → 633
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials