METTL23 methyltransferase like 23 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: METTL23provided by VGNC
Official Full Name: methyltransferase like 23provided by VGNC
Primary source: VGNC:VGNC:98125
See related: Ensembl:ENSSSCG00000023139
Gene type: protein coding
RefSeq status: MODEL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Ubiquitous expression in spleen (RPKM 50.6), lung (RPKM 39.3) and 8 other tissues See more
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 12

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	12	NC_010454.4 (4802404..4808948, complement)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	12	NC_010454.3 (4655404..4660799, complement)

Chromosome 12 - NC_010454.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Association Analysis of METTL23 Gene Polymorphisms with Reproductive Traits in Kele Pigs.
Title: Association Analysis of METTL23 Gene Polymorphisms with Reproductive Traits in Kele Pigs.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

D11Wsu175e (e-PCR), detects polymorphism
- UniSTS:141827

LOC124512 (e-PCR)
- UniSTS:279380

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: methyltransferase-like protein 23

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

NC_010454.4 Reference Sscrofa11.1 Primary Assembly

Range

4802404..4808948 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_003482946.4 → XP_003482994.1 methyltransferase-like protein 23 isoform X1

See identical proteins and their annotated locations for XP_003482994.1

UniProtKB/TrEMBL

A0A4X1UX94, A0A8D0SKZ1, A0A8D1Q1V2, I3LH79

Conserved Domains (1) summary

cl17173
Location:3 → 126

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
XM_005656906.3 → XP_005656963.1 methyltransferase-like protein 23 isoform X2

UniProtKB/TrEMBL

A0A4X1UU33

Conserved Domains (1) summary

cl17173
Location:1 → 59

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
XM_003357951.5 → XP_003357999.1 methyltransferase-like protein 23 isoform X1

See identical proteins and their annotated locations for XP_003357999.1

UniProtKB/TrEMBL

A0A4X1UX94, A0A8D0SKZ1, A0A8D1Q1V2, I3LH79

Related

ENSSSCP00000023424.3, ENSSSCT00000025222.4

Conserved Domains (1) summary

cl17173
Location:3 → 126

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
XM_013989854.2 → XP_013845308.2 methyltransferase-like protein 23 isoform X3

UniProtKB/TrEMBL

A0A8D1Q1V2

Conserved Domains (1) summary

cl17173
Location:25 → 122

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...