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IMP4 IMP U3 small nucleolar ribonucleoprotein 4 [ Sus scrofa (pig) ]

Gene ID: 100621511, updated on 17-Aug-2024

Summary

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Official Symbol
IMP4provided by VGNC
Official Full Name
IMP U3 small nucleolar ribonucleoprotein 4provided by VGNC
Primary source
VGNC:VGNC:96252
See related
Ensembl:ENSSSCG00000015734
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 25.5), kidney (RPKM 20.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See IMP4 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (31970179..31975158, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003538385.2 (14924..19189, complement)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene basic proline-rich protein-like Neighboring gene protein tyrosine phosphatase non-receptor type 18 Neighboring gene coiled-coil domain containing 115 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene tubulin gamma complex component 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA primary transcript binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mpp10 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar ribonucleoprotein protein IMP4
Names
IMP4 homolog, U3 small nucleolar ribonucleoprotein
IMP4, U3 small nucleolar ribonucleoprotein, homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    31970179..31975158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021074943.1 → XP_020930602.1  U3 small nucleolar ribonucleoprotein protein IMP4 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SDZ2, A0A8D0JM32, F1RXX3
    Related
    ENSSSCP00000016674.3, ENSSSCT00000017134.5
    Conserved Domains (1) summary
    smart00879
    Location:86 → 253
    Brix; The Brix domain is found in a number of eukaryotic proteins

  2. XM_021074944.1 → XP_020930603.1  U3 small nucleolar ribonucleoprotein protein IMP4 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SDZ2, A0A8D0JM32, F1RXX3
    Conserved Domains (1) summary
    smart00879
    Location:86 → 253
    Brix; The Brix domain is found in a number of eukaryotic proteins

  3. XM_021074945.1 → XP_020930604.1  U3 small nucleolar ribonucleoprotein protein IMP4 isoform X2

    UniProtKB/TrEMBL
    A0A480ZRE7
    Conserved Domains (1) summary
    smart00879
    Location:16 → 183
    Brix; The Brix domain is found in a number of eukaryotic proteins
Nucleotide Protein
Heading Accession and Version

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