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MXRA8 matrix remodeling associated 8 [ Sus scrofa (pig) ]

Gene ID: 100621355, updated on 17-Aug-2024

Summary

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Official Symbol
MXRA8provided by VGNC
Official Full Name
matrix remodeling associated 8provided by VGNC
Primary source
VGNC:VGNC:90494
See related
Ensembl:ENSSSCG00000021880
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 95.1), kidney (RPKM 48.8) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MXRA8 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (63630936..63635623, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (58129311..58134214, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene ceramide-1-phosphate transfer protein Neighboring gene taste 1 receptor member 3 Neighboring gene dishevelled segment polarity protein 1 Neighboring gene uncharacterized LOC110261342 Neighboring gene aurora kinase A interacting protein 1 Neighboring gene cyclin L2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of glial blood-brain barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrix remodeling-associated protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    63630936..63635623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003356116.5 → XP_003356164.2  matrix remodeling-associated protein 8 isoform X4

    UniProtKB/TrEMBL
    A0A287AKH1, A0A8D1DAQ7, A0A8D2AGL7
    Conserved Domains (1) summary
    pfam07686
    Location:166 → 290
    V-set; Immunoglobulin V-set domain

  2. XM_021097443.1 → XP_020953102.1  matrix remodeling-associated protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A8D2AGL7
    Conserved Domains (1) summary
    pfam07686
    Location:242 → 366
    V-set; Immunoglobulin V-set domain

  3. XM_021097442.1 → XP_020953101.1  matrix remodeling-associated protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8D2AGL7
    Conserved Domains (1) summary
    pfam07686
    Location:242 → 366
    V-set; Immunoglobulin V-set domain

  4. XM_013995567.2 → XP_013851021.1  matrix remodeling-associated protein 8 isoform X3

    UniProtKB/TrEMBL
    A0A8D0VQP7, A0A8D2AGL7
    Conserved Domains (1) summary
    pfam07686
    Location:166 → 290
    V-set; Immunoglobulin V-set domain

RNA

  1. XR_002345406.1 RNA Sequence

    Related
    ENSSSCT00000029719.4
Nucleotide Protein
Heading Accession and Version

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