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A4GNT alpha-1,4-N-acetylglucosaminyltransferase [ Sus scrofa (pig) ]

Gene ID: 100621190, updated on 17-Aug-2024

Summary

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Official Symbol
A4GNTprovided by VGNC
Official Full Name
alpha-1,4-N-acetylglucosaminyltransferaseprovided by VGNC
Primary source
VGNC:VGNC:84935
See related
Ensembl:ENSSSCG00000022473
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See A4GNT in Genome Data Viewer
Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (78921212..78932575, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (86522225..86529461)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene claudin 18 Neighboring gene DAZ interacting zinc finger protein 1 like Neighboring gene debranching RNA lariats 1 Neighboring gene armadillo repeat containing 8 Neighboring gene NME/NM23 family member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,4-N-acetylglucosaminyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    78921212..78932575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013982052.2 → XP_013837506.1  alpha-1,4-N-acetylglucosaminyltransferase

    UniProtKB/TrEMBL
    A0A4X1TK07, A0A8D0JQQ0, I3LSM2
    Related
    ENSSSCP00000027115.1, ENSSSCT00000025162.3
    Conserved Domains (2) summary
    pfam04572
    Location:201 → 321
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:64 → 182
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

  2. XM_003358568.4 → XP_003358616.1  alpha-1,4-N-acetylglucosaminyltransferase

    UniProtKB/TrEMBL
    A0A4X1TK07, A0A8D0JQQ0, I3LSM2
    Conserved Domains (2) summary
    pfam04572
    Location:201 → 321
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:64 → 182
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
Nucleotide Protein
Heading Accession and Version

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