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YARS1 tyrosyl-tRNA synthetase 1 [ Sus scrofa (pig) ]

Gene ID: 100621140, updated on 17-Aug-2024

Summary

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Official Symbol
YARS1provided by VGNC
Official Full Name
tyrosyl-tRNA synthetase 1provided by VGNC
Primary source
VGNC:VGNC:98680
See related
Ensembl:ENSSSCG00000030369
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
YARS
Expression
Ubiquitous expression in spleen (RPKM 18.3), liver (RPKM 17.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See YARS1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (89088122..89118837, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (83115016..83145732, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene RB binding protein 4, chromatin remodeling factor Neighboring gene syncoilin, intermediate filament protein Neighboring gene NHS like 3 Neighboring gene S100P binding protein Neighboring gene fibronectin type III domain containing 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tyrosine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tyrosyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosine--tRNA ligase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    89088122..89118837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013999119.2 → XP_013854573.1  tyrosine--tRNA ligase, cytoplasmic isoform X2

    UniProtKB/TrEMBL
    A0A8D1RHA2
    Conserved Domains (2) summary
    cl00015
    Location:1 → 273
    nt_trans; nucleotidyl transferase superfamily
    cl26127
    Location:279 → 473
    PRK12267; methionyl-tRNA synthetase; Reviewed

  2. XM_021095817.1 → XP_020951476.1  tyrosine--tRNA ligase, cytoplasmic isoform X2

    UniProtKB/TrEMBL
    A0A8D1RHA2
    Conserved Domains (2) summary
    cl00015
    Location:1 → 273
    nt_trans; nucleotidyl transferase superfamily
    cl26127
    Location:279 → 473
    PRK12267; methionyl-tRNA synthetase; Reviewed

  3. XM_003356295.4 → XP_003356343.3  tyrosine--tRNA ligase, cytoplasmic isoform X1

    UniProtKB/TrEMBL
    A0A4X1VTE1, A0A8D0PIS1, A0A8D1RHA2, I3L804
    Related
    ENSSSCP00000020162.2, ENSSSCT00000022969.3
    Conserved Domains (3) summary
    cd02799
    Location:363 → 468
    tRNA_bind_EMAP-II_like; tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae ...
    TIGR00234
    Location:9 → 328
    tyrS; tyrosyl-tRNA synthetase
    cl00015
    Location:8 → 328
    nt_trans; nucleotidyl transferase superfamily
Nucleotide Protein
Heading Accession and Version

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