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HSPG2 heparan sulfate proteoglycan 2 [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100617792, updated on 6-Jun-2024

Summary

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Gene symbol
HSPG2
Gene description
heparan sulfate proteoglycan 2
See related
EnsemblRapid:ENSMODG00000016051
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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See HSPG2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
107
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 4 NC_077230.1 (386209050..386382322)
103 previous assembly MonDom5 (GCF_000002295.2) 4 NC_008804.1 (356319216..356469109)

Chromosome 4 - NC_077230.1Genomic Context describing neighboring genes Neighboring gene chymotrypsin-like elastase family member 3B Neighboring gene uncharacterized LOC103096251 Neighboring gene low density lipoprotein receptor class A domain containing 2 Neighboring gene ubiquitin specific peptidase 48

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basement membrane-specific heparan sulfate proteoglycan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077230.1 Reference mMonDom1.pri

    Range
    386209050..386382322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056795621.1 → XP_056651599.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X1

    UniProtKB/TrEMBL
    F7GIZ7

  2. XM_056795623.1 → XP_056651601.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X3

    UniProtKB/TrEMBL
    F7GIZ7
    Related
    ENSMODP00000058538.2, ENSMODT00000072047.2

  3. XM_056795625.1 → XP_056651603.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X5

    UniProtKB/TrEMBL
    F7GIZ7

  4. XM_056795622.1 → XP_056651600.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X2

    UniProtKB/TrEMBL
    F7GIZ7

  5. XM_056795624.1 → XP_056651602.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X4

    UniProtKB/TrEMBL
    F7GIZ7
    Related
    ENSMODP00000053369.2, ENSMODT00000081435.2

  6. XM_056795626.1 → XP_056651604.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X6

    UniProtKB/TrEMBL
    F7GIZ7
    Related
    ENSMODP00000053833.2, ENSMODT00000053987.2
Nucleotide Protein
Heading Accession and Version

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