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PKD1 polycystin 1, transient receptor potential channel interacting [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100607008, updated on 8-Mar-2024

Summary

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Gene symbol
PKD1
Gene description
polycystin 1, transient receptor potential channel interacting
See related
EnsemblRapid:ENSNLEG00000039574
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See PKD1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
46
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 18 NC_044398.1 (100910025..100960068)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 18 NC_019833.1 (87042274..87059772)

Chromosome 18 - NC_044398.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100590305 Neighboring gene small nucleolar RNA SNORD60 Neighboring gene RAB26, member RAS oncogene family Neighboring gene TSC complex subunit 2 Neighboring gene endonuclease III-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: polycystin-1
Names
polycystic kidney disease 1 (autosomal dominant)
polycystin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044398.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    100910025..100960068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030798934.1 → XP_030654794.1  LOW QUALITY PROTEIN: polycystin-1

    Related
    ENSNLEP00000054372.1, ENSNLET00000061567.1
    Conserved Domains (6) summary
    TIGR00864
    Location:99 → 2730
    PCC; polycystin cation channel protein
    smart00303
    Location:3010 → 3059
    GPS; G-protein-coupled receptor proteolytic site domain
    COG4886
    Location:52 → 128
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd01752
    Location:3117 → 3236
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    sd00031
    Location:72 → 94
    LRR_1; leucine-rich repeat [structural motif]
    pfam08016
    Location:3712 → 4112
    PKD_channel; Polycystin cation channel
Nucleotide Protein
Heading Accession and Version

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