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OXCT1 3-oxoacid CoA-transferase 1 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100606944, updated on 8-Mar-2024

Summary

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Gene symbol
OXCT1
Gene description
3-oxoacid CoA-transferase 1
See related
EnsemblRapid:ENSNLEG00000016656
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See OXCT1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 6 NC_044386.1 (38553827..38695104, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 6 NC_019821.1 (40232117..40419528, complement)

Chromosome 6 - NC_044386.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol specific phospholipase C X domain containing 3 Neighboring gene T-complex protein 1 subunit alpha pseudogene Neighboring gene RAB7A interacting MON1-CCZ1 complex subunit 1 Neighboring gene F-box protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables succinyl-CoA:3-oxo-acid CoA-transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ketone body catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044386.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    38553827..38695104 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030814016.1 → XP_030669876.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X1

    UniProtKB/TrEMBL
    G1S3W6
    Related
    ENSNLEP00000020204.3, ENSNLET00000021214.3
    Conserved Domains (2) summary
    COG1788
    Location:41 → 274
    AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]
    cl00339
    Location:300 → 508
    SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...

  2. XM_030814017.1 → XP_030669877.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X2

    UniProtKB/TrEMBL
    G1S3W6
    Conserved Domains (2) summary
    COG1788
    Location:48 → 281
    AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]
    cl00339
    Location:307 → 515
    SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...
Nucleotide Protein
Heading Accession and Version

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