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SDC1 syndecan 1 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100604383, updated on 8-Mar-2024

Summary

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Gene symbol
SDC1
Gene description
syndecan 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 19 NC_044399.1 (19737858..19762324, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 19 NC_019834.1 (19996728..20022338, complement)

Chromosome 19 - NC_044399.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S16 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene developmentally-regulated GTP-binding protein 1 pseudogene Neighboring gene U7 small nuclear RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044399.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    19737858..19762324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003275979.3 → XP_003276027.2  syndecan-1

    UniProtKB/TrEMBL
    A0A2I3FUM1
    Conserved Domains (2) summary
    PHA03269
    Location:52 → 201
    PHA03269; envelope glycoprotein C; Provisional
    pfam01034
    Location:252 → 315
    Syndecan; Syndecan domain

  2. XM_003275978.4 → XP_003276026.2  syndecan-1

    UniProtKB/TrEMBL
    A0A2I3FUM1
    Conserved Domains (2) summary
    PHA03269
    Location:52 → 201
    PHA03269; envelope glycoprotein C; Provisional
    pfam01034
    Location:252 → 315
    Syndecan; Syndecan domain
Nucleotide Protein
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