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SPTLC2 serine palmitoyltransferase long chain base subunit 2 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100601824, updated on 19-Jun-2024

Summary

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Gene symbol
SPTLC2
Gene description
serine palmitoyltransferase long chain base subunit 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See SPTLC2 in Genome Data Viewer
Location:
chromosome: 22a
Exon count:
12
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 22a NC_044402.1 (27953419..28065762)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 22a NC_019837.1 (28645401..28758158)

Chromosome 22a - NC_044402.1Genomic Context describing neighboring genes Neighboring gene zinc finger MYND domain-containing protein 19 pseudogene Neighboring gene SRA stem-loop interacting RNA binding protein Neighboring gene alkB homolog 1, histone H2A dioxygenase Neighboring gene isthmin 2 Neighboring gene activator of HSP90 ATPase activity 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044402.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    27953419..28065762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003260811.4 → XP_003260859.1  serine palmitoyltransferase 2

    See identical proteins and their annotated locations for XP_003260859.1

    UniProtKB/TrEMBL
    A0A2I3HUF9, G1S4A1
    Conserved Domains (1) summary
    PLN02483
    Location:71 → 546
    PLN02483; serine palmitoyltransferase
Nucleotide Protein
Heading Accession and Version

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