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CHIA chitinase acidic [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100600050, updated on 8-Mar-2024

Summary

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Gene symbol
CHIA
Gene description
chitinase acidic
See related
EnsemblRapid:ENSNLEG00000003831
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human all
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Genomic context

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See CHIA in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 12 NC_044392.1 (64629374..64652730, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 12 NC_019827.1 (66406205..66429144, complement)

Chromosome 12 - NC_044392.1Genomic Context describing neighboring genes Neighboring gene HIG1 domain family member 1A, mitochondrial pseudogene Neighboring gene ciliary microtubule associated protein 3 Neighboring gene acidic mammalian chitinase-like Neighboring gene chitinase 3 like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acidic mammalian chitinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044392.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    64629374..64652730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003267961.3 → XP_003268009.1  acidic mammalian chitinase isoform X2

    See identical proteins and their annotated locations for XP_003268009.1

    Conserved Domains (2) summary
    cd02872
    Location:1 → 279
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00494
    Location:321 → 368
    ChtBD2; Chitin-binding domain type 2

  2. XM_003267960.2 → XP_003268008.1  acidic mammalian chitinase isoform X2

    See identical proteins and their annotated locations for XP_003268008.1

    Conserved Domains (2) summary
    cd02872
    Location:1 → 279
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00494
    Location:321 → 368
    ChtBD2; Chitin-binding domain type 2

  3. XM_012500371.2 → XP_012355825.1  acidic mammalian chitinase isoform X2

    See identical proteins and their annotated locations for XP_012355825.1

    Conserved Domains (2) summary
    cd02872
    Location:1 → 279
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00494
    Location:321 → 368
    ChtBD2; Chitin-binding domain type 2

  4. XM_004089989.2 → XP_004090037.1  acidic mammalian chitinase isoform X3

    See identical proteins and their annotated locations for XP_004090037.1

    Conserved Domains (2) summary
    smart00494
    Location:268 → 315
    ChtBD2; Chitin-binding domain type 2
    cl10447
    Location:1 → 226
    GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...

  5. XM_003267962.3 → XP_003268010.1  acidic mammalian chitinase isoform X2

    See identical proteins and their annotated locations for XP_003268010.1

    Conserved Domains (2) summary
    cd02872
    Location:1 → 279
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00494
    Location:321 → 368
    ChtBD2; Chitin-binding domain type 2

  6. XM_004089988.2 → XP_004090036.1  acidic mammalian chitinase isoform X3

    See identical proteins and their annotated locations for XP_004090036.1

    Conserved Domains (2) summary
    smart00494
    Location:268 → 315
    ChtBD2; Chitin-binding domain type 2
    cl10447
    Location:1 → 226
    GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...

  7. XM_004089987.2 → XP_004090035.2  acidic mammalian chitinase isoform X1

    UniProtKB/TrEMBL
    G1QUR7
    Related
    ENSNLEP00000004687.2, ENSNLET00000004927.3
    Conserved Domains (2) summary
    cd02872
    Location:24 → 387
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00494
    Location:429 → 476
    ChtBD2; Chitin-binding domain type 2
Nucleotide Protein
Heading Accession and Version

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