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CD1D CD1d molecule [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100597833, updated on 8-Mar-2024

Summary

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Gene symbol
CD1D
Gene description
CD1d molecule
See related
EnsemblRapid:ENSNLEG00000013036
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See CD1D in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 12 NC_044392.1 (43133439..43141838, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 12 NC_019827.1 (44104170..44111030, complement)

Chromosome 12 - NC_044392.1Genomic Context describing neighboring genes Neighboring gene CD1c molecule Neighboring gene CD1a molecule Neighboring gene RNA polymerase II elongation factor ELL2 pseudogene Neighboring gene uncharacterized LOC105740586

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables exogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation, endogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in antigen processing and presentation, exogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
antigen-presenting glycoprotein CD1d

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044392.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    43133439..43141838 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003258648.4 → XP_003258696.2  antigen-presenting glycoprotein CD1d isoform X1

    UniProtKB/TrEMBL
    G1RRF1
    Related
    ENSNLEP00000015815.2, ENSNLET00000016621.3

  2. XM_030823209.1 → XP_030679069.1  antigen-presenting glycoprotein CD1d isoform X1

    UniProtKB/TrEMBL
    G1RRF1
    Conserved Domains (2) summary
    cd07698
    Location:203 → 295
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    cl08246
    Location:1 → 198
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2

  3. XM_030823211.1 → XP_030679071.1  antigen-presenting glycoprotein CD1d isoform X3

  4. XM_030823210.1 → XP_030679070.1  antigen-presenting glycoprotein CD1d isoform X2

    Related
    ENSNLEP00000053042.1, ENSNLET00000069084.1
    Conserved Domains (1) summary
    cl08246
    Location:1 → 198
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
Nucleotide Protein
Heading Accession and Version

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