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SMPD1 sphingomyelin phosphodiesterase 1 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100596565, updated on 8-Mar-2024

Summary

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Gene symbol
SMPD1
Gene description
sphingomyelin phosphodiesterase 1
See related
EnsemblRapid:ENSNLEG00000017402
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See SMPD1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 15 NC_044395.1 (67272660..67277514)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 15 NC_019830.1 (68242329..68247183)

Chromosome 15 - NC_044395.1Genomic Context describing neighboring genes Neighboring gene cholecystokinin B receptor Neighboring gene caveolae associated protein 3 Neighboring gene amyloid beta precursor protein binding family B member 1 Neighboring gene hemopexin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044395.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    67272660..67277514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030828700.1 → XP_030684560.1  sphingomyelin phosphodiesterase isoform X1

    UniProtKB/TrEMBL
    G1S6I2
    Related
    ENSNLEP00000021121.2, ENSNLET00000022196.4
    Conserved Domains (2) summary
    smart00741
    Location:83 → 156
    SapB; Saposin (B) Domains
    cd00842
    Location:197 → 492
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  2. XM_030828701.1 → XP_030684561.1  sphingomyelin phosphodiesterase isoform X2

    UniProtKB/TrEMBL
    G1S6I2
    Conserved Domains (1) summary
    cd00842
    Location:87 → 382
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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