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CHPF chondroitin polymerizing factor [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100589763, updated on 8-Mar-2024

Summary

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Gene symbol
CHPF
Gene description
chondroitin polymerizing factor
See related
EnsemblRapid:ENSNLEG00000009523
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See CHPF in Genome Data Viewer
Location:
chromosome: 22a
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 22a NC_044402.1 (120194723..120199565, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 22a NC_019837.1 (110458199..110463155, complement)

Chromosome 22a - NC_044402.1Genomic Context describing neighboring genes Neighboring gene GDP-mannose pyrophosphorylase A Neighboring gene acid sensing ion channel subunit family member 4 Neighboring gene transmembrane protein 198 Neighboring gene obscurin like cytoskeletal adaptor 1 Neighboring gene inhibin subunit alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044402.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    120194723..120199565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030802483.1 → XP_030658343.1  chondroitin sulfate synthase 2

    UniProtKB/TrEMBL
    G1RED8
    Related
    ENSNLEP00000011588.3, ENSNLET00000012161.3
    Conserved Domains (2) summary
    pfam05679
    Location:262 → 762
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:194 → 304
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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