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SF3B5 splicing factor 3b subunit 5 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100589210, updated on 8-Mar-2024

Summary

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Gene symbol
SF3B5
Gene description
splicing factor 3b subunit 5
See related
EnsemblRapid:ENSNLEG00000019307
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See SF3B5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 3 NC_044383.1 (130147771..130148518, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 3 NC_019818.1 (131500508..131501253, complement)

Chromosome 3 - NC_044383.1Genomic Context describing neighboring genes Neighboring gene zinc finger C2HC-type containing 1B Neighboring gene PLAG1 like zinc finger 1 Neighboring gene uncharacterized LOC115832485 Neighboring gene syntaxin 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044383.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    130147771..130148518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003255834.3 → XP_003255882.1  splicing factor 3B subunit 5

    See identical proteins and their annotated locations for XP_003255882.1

    UniProtKB/TrEMBL
    G1SC94
    Related
    ENSNLEP00000023144.1, ENSNLET00000024332.3
    Conserved Domains (1) summary
    pfam07189
    Location:3 → 77
    SF3b10; Splicing factor 3B subunit 10 (SF3b10)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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