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GLB1 galactosidase beta 1 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100586200, updated on 8-Mar-2024

Summary

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Gene symbol
GLB1
Gene description
galactosidase beta 1
See related
EnsemblRapid:ENSNLEG00000004433
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See GLB1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 4 NC_044384.1 (118336875..118450560)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 4 NC_019819.1 (119479056..119585269)

Chromosome 4 - NC_044384.1Genomic Context describing neighboring genes Neighboring gene sushi domain containing 5 Neighboring gene cartilage associated protein Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene transmembrane protein with metallophosphoesterase domain Neighboring gene protein SEC13 homolog pseudogene Neighboring gene C-C motif chemokine receptor 4 Neighboring gene tripartite motif containing 71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-galactosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044384.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    118336875..118450560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030812220.1 → XP_030668080.1  beta-galactosidase isoform X2

    Related
    ENSNLEP00000005471.4, ENSNLET00000005755.4
    Conserved Domains (2) summary
    pfam01301
    Location:40 → 353
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:550 → 618
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

  2. XM_003256823.3 → XP_003256871.1  beta-galactosidase isoform X1

    UniProtKB/TrEMBL
    A0A2I3HFY4
    Related
    ENSNLEP00000050574.1, ENSNLET00000062490.1
    Conserved Domains (2) summary
    pfam01301
    Location:41 → 354
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:551 → 619
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

  3. XM_012497418.2 → XP_012352872.1  beta-galactosidase isoform X3

    See identical proteins and their annotated locations for XP_012352872.1

    UniProtKB/TrEMBL
    G1QX00
    Conserved Domains (2) summary
    pfam01301
    Location:11 → 324
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:521 → 589
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain
Nucleotide Protein
Heading Accession and Version

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