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PRDM1 PR/SET domain 1 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100585120, updated on 8-Mar-2024

Summary

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Gene symbol
PRDM1
Gene description
PR/SET domain 1
See related
EnsemblRapid:ENSNLEG00000013211
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See PRDM1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 3 NC_044383.1 (92525249..92548886)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 3 NC_019818.1 (93362274..93385898)

Chromosome 3 - NC_044383.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L35 pseudogene Neighboring gene prolyl endopeptidase Neighboring gene chromatin assembly factor 1 subunit B pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene autophagy related 5 Neighboring gene crystallin beta-gamma domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044383.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    92525249..92548886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012505906.2 → XP_012361360.1  PR domain zinc finger protein 1 isoform X2

    Related
    ENSNLEP00000053792.1, ENSNLET00000062785.1
    Conserved Domains (4) summary
    sd00017
    Location:541 → 561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:539 → 561
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:581 → 606
    zf-H2C2_2; Zinc-finger double domain
    cd19187
    Location:45 → 172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins

  2. XM_003278909.3 → XP_003278957.1  PR domain zinc finger protein 1 isoform X1

    UniProtKB/TrEMBL
    G1RS40
    Related
    ENSNLEP00000016062.1, ENSNLET00000016882.4
    Conserved Domains (4) summary
    COG5048
    Location:570 → 688
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:577 → 597
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:617 → 642
    zf-H2C2_2; Zinc-finger double domain
    cd19187
    Location:81 → 208
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins

  3. XM_003278908.3 → XP_003278956.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2I3GKR4
    Related
    ENSNLEP00000031857.1, ENSNLET00000042777.2
    Conserved Domains (4) summary
    sd00017
    Location:443 → 463
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:441 → 463
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:483 → 508
    zf-H2C2_2; Zinc-finger double domain
    cl40432
    Location:3 → 74
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
Nucleotide Protein
Heading Accession and Version

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