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PNPLA6 patatin like phospholipase domain containing 6 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100583143, updated on 8-Mar-2024

Summary

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Gene symbol
PNPLA6
Gene description
patatin like phospholipase domain containing 6
See related
EnsemblRapid:ENSNLEG00000000886
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See PNPLA6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) Unplaced Scaffold NW_022095767.1 (2698240..2726047)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 10 NC_019825.1 (66638519..66663913, complement)

NW_022095767.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 358 Neighboring gene mucolipin TRP cation channel 1 Neighboring gene uncharacterized LOC115833530 Neighboring gene calmodulin regulated spectrin associated protein family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylcholine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuropathy target esterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NW_022095767.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    2698240..2726047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030807692.1 → XP_030663552.1  neuropathy target esterase isoform X5

    UniProtKB/TrEMBL
    A0A2I3H2A1
    Related
    ENSNLEP00000001089.3, ENSNLET00000001153.3
    Conserved Domains (3) summary
    cd07225
    Location:916 → 1221
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    PHA03378
    Location:300 → 418
    PHA03378; EBNA-3B; Provisional
    cd00038
    Location:587 → 695
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  2. XM_030807695.1 → XP_030663555.1  neuropathy target esterase isoform X6

    UniProtKB/TrEMBL
    A0A2I3H2A1
    Related
    ENSNLEP00000037587.2, ENSNLET00000046473.2
    Conserved Domains (3) summary
    cd07225
    Location:915 → 1220
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    PHA03378
    Location:300 → 418
    PHA03378; EBNA-3B; Provisional
    cd00038
    Location:587 → 695
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  3. XM_030807693.1 → XP_030663553.1  neuropathy target esterase isoform X5

    UniProtKB/TrEMBL
    A0A2I3H2A1
    Conserved Domains (3) summary
    cd07225
    Location:916 → 1221
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    PHA03378
    Location:300 → 418
    PHA03378; EBNA-3B; Provisional
    cd00038
    Location:587 → 695
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  4. XM_030807694.1 → XP_030663554.1  neuropathy target esterase isoform X5

    UniProtKB/TrEMBL
    A0A2I3H2A1
    Conserved Domains (3) summary
    cd07225
    Location:916 → 1221
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    PHA03378
    Location:300 → 418
    PHA03378; EBNA-3B; Provisional
    cd00038
    Location:587 → 695
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  5. XM_030807689.1 → XP_030663549.1  neuropathy target esterase isoform X2

    UniProtKB/TrEMBL
    G1QJJ4
    Conserved Domains (3) summary
    cd07225
    Location:955 → 1260
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    PHA03378
    Location:339 → 457
    PHA03378; EBNA-3B; Provisional
    cd00038
    Location:626 → 734
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  6. XM_030807688.1 → XP_030663548.1  neuropathy target esterase isoform X1

    UniProtKB/TrEMBL
    G1QJJ4
    Conserved Domains (3) summary
    cd07225
    Location:955 → 1260
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    PHA03378
    Location:339 → 457
    PHA03378; EBNA-3B; Provisional
    cd00038
    Location:626 → 734
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  7. XM_030807690.1 → XP_030663550.1  neuropathy target esterase isoform X3

    UniProtKB/TrEMBL
    G1QJJ4
    Conserved Domains (3) summary
    cd07225
    Location:954 → 1259
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    PHA03378
    Location:339 → 457
    PHA03378; EBNA-3B; Provisional
    cd00038
    Location:626 → 734
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  8. XM_030807691.1 → XP_030663551.1  neuropathy target esterase isoform X4

    UniProtKB/TrEMBL
    G1QJJ4
    Conserved Domains (3) summary
    cd07225
    Location:927 → 1232
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    PHA03247
    Location:344 → 437
    PHA03247; large tegument protein UL36; Provisional
    cd00038
    Location:598 → 706
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
Nucleotide Protein
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