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LTBR lymphotoxin beta receptor [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100582084, updated on 8-Mar-2024

Summary

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Gene symbol
LTBR
Gene description
lymphotoxin beta receptor
See related
EnsemblRapid:ENSNLEG00000003663
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See LTBR in Genome Data Viewer
Location:
chromosome: 23
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 23 NC_044403.1 (26244407..26261803, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 23 NC_019838.1 (28192969..28198763, complement)

Chromosome 23 - NC_044403.1Genomic Context describing neighboring genes Neighboring gene CD27 molecule Neighboring gene uncharacterized LOC115832914 Neighboring gene TNF receptor superfamily member 1A Neighboring gene pleckstrin homology and RhoGEF domain containing G6 Neighboring gene pleckstrin homology domain-containing family G member 6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hematopoietic or lymphoid organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044403.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    26244407..26261803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030804735.1 → XP_030660595.1  tumor necrosis factor receptor superfamily member 3 isoform X3

    Conserved Domains (3) summary
    cd00185
    Location:151 → 191
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:5 → 149
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:129 → 193
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  2. XM_030804737.1 → XP_030660597.1  tumor necrosis factor receptor superfamily member 3 isoform X5

    Related
    ENSNLEP00000039016.2, ENSNLET00000053768.2
    Conserved Domains (3) summary
    cd00185
    Location:151 → 191
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:5 → 149
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:129 → 193
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  3. XM_030804736.1 → XP_030660596.1  tumor necrosis factor receptor superfamily member 3 isoform X4

    Conserved Domains (3) summary
    cd00185
    Location:170 → 210
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 168
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:148 → 212
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  4. XM_030804733.1 → XP_030660593.1  tumor necrosis factor receptor superfamily member 3 isoform X1

    Related
    ENSNLEP00000028177.2, ENSNLET00000036609.2
    Conserved Domains (3) summary
    cd00185
    Location:170 → 210
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 168
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:148 → 212
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  5. XM_030804738.1 → XP_030660598.1  tumor necrosis factor receptor superfamily member 3 isoform X6

    Conserved Domains (3) summary
    cd00185
    Location:170 → 210
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 168
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:148 → 212
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  6. XM_030804734.1 → XP_030660594.1  tumor necrosis factor receptor superfamily member 3 isoform X2

    Conserved Domains (3) summary
    cd00185
    Location:169 → 209
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 167
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:147 → 211
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  7. XM_030804739.1 → XP_030660599.1  tumor necrosis factor receptor superfamily member 3 isoform X7

  8. XM_030804740.1 → XP_030660600.1  tumor necrosis factor receptor superfamily member 3 isoform X7

Nucleotide Protein
Heading Accession and Version

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