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SDC3 syndecan 3 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100581544, updated on 8-Mar-2024

Summary

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Gene symbol
SDC3
Gene description
syndecan 3
See related
EnsemblRapid:ENSNLEG00000001148
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See SDC3 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 12 NC_044392.1 (183705..222672, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 12 NC_019827.1 (181238..189764, complement)

Chromosome 12 - NC_044392.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101175805 Neighboring gene matrilin 1 Neighboring gene lysosomal protein transmembrane 5 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene pumilio RNA binding family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044392.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    183705..222672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030823255.1 → XP_030679115.1  syndecan-3

    UniProtKB/TrEMBL
    G1QK95
    Related
    ENSNLEP00000001340.3, ENSNLET00000001418.4
    Conserved Domains (1) summary
    pfam01034
    Location:378 → 440
    Syndecan; Syndecan domain
Nucleotide Protein
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