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ATRNL1 attractin like 1 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100579305, updated on 8-Mar-2024

Summary

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Gene symbol
ATRNL1
Gene description
attractin like 1
See related
EnsemblRapid:ENSNLEG00000016356
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See ATRNL1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
31
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 3 NC_044383.1 (17608588..18462112, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 3 NC_019818.1 (17956335..18824778, complement)

Chromosome 3 - NC_044383.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 172 Neighboring gene GDNF family receptor alpha 1 Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L15-like Neighboring gene TruB pseudouridine synthase family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044383.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    17608588..18462112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030806602.1 → XP_030662462.1  attractin-like protein 1 isoform X4

    UniProtKB/TrEMBL
    G1S2W1
    Conserved Domains (9) summary
    cd03597
    Location:748 → 874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:454 → 600
    PLN02153; epithiospecifier protein
    PLN02193
    Location:300 → 387
    PLN02193; nitrile-specifier protein
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:940 → 985
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:521 → 574
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:889 → 938
    PSI; Plexin repeat
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif
    cl19567
    Location:235 → 280
    DSL; Delta serrate ligand

  2. XM_030806597.1 → XP_030662457.1  attractin-like protein 1 isoform X3

    UniProtKB/TrEMBL
    G1S2W1
    Conserved Domains (8) summary
    cd03597
    Location:748 → 874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:454 → 600
    PLN02153; epithiospecifier protein
    PLN02193
    Location:300 → 387
    PLN02193; nitrile-specifier protein
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    sd00038
    Location:521 → 574
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:889 → 938
    PSI; Plexin repeat
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif
    cl19567
    Location:235 → 280
    DSL; Delta serrate ligand

  3. XM_030806609.1 → XP_030662469.1  attractin-like protein 1 isoform X5

    UniProtKB/TrEMBL
    G1S2W1
    Conserved Domains (9) summary
    cd03597
    Location:748 → 874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:454 → 600
    PLN02153; epithiospecifier protein
    PLN02193
    Location:300 → 387
    PLN02193; nitrile-specifier protein
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1013 → 1058
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:521 → 574
    Kelch; KELCH repeat [structural motif]
    pfam01414
    Location:235 → 280
    DSL; Delta serrate ligand
    pfam01437
    Location:889 → 937
    PSI; Plexin repeat
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif

  4. XM_030806590.1 → XP_030662450.1  attractin-like protein 1 isoform X2

    UniProtKB/TrEMBL
    G1S2W1
    Conserved Domains (9) summary
    cd03597
    Location:748 → 874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:454 → 600
    PLN02153; epithiospecifier protein
    PLN02193
    Location:300 → 387
    PLN02193; nitrile-specifier protein
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1013 → 1058
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:521 → 574
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:889 → 938
    PSI; Plexin repeat
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif
    cl19567
    Location:235 → 280
    DSL; Delta serrate ligand

  5. XM_030806582.1 → XP_030662442.1  attractin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    G1S2W1
    Related
    ENSNLEP00000019849.3, ENSNLET00000020847.4
    Conserved Domains (9) summary
    cd03597
    Location:748 → 874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:454 → 600
    PLN02153; epithiospecifier protein
    PLN02193
    Location:300 → 387
    PLN02193; nitrile-specifier protein
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1013 → 1058
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:521 → 574
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:889 → 938
    PSI; Plexin repeat
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif
    cl19567
    Location:235 → 280
    DSL; Delta serrate ligand

  6. XM_030806617.1 → XP_030662477.1  attractin-like protein 1 isoform X7

    UniProtKB/TrEMBL
    G1S2W1
    Conserved Domains (9) summary
    cd03597
    Location:748 → 874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:454 → 600
    PLN02153; epithiospecifier protein
    PLN02193
    Location:300 → 387
    PLN02193; nitrile-specifier protein
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1013 → 1058
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:521 → 574
    Kelch; KELCH repeat [structural motif]
    pfam01414
    Location:235 → 280
    DSL; Delta serrate ligand
    pfam01437
    Location:889 → 937
    PSI; Plexin repeat
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif

  7. XM_030806612.1 → XP_030662472.1  attractin-like protein 1 isoform X6

    UniProtKB/TrEMBL
    G1S2W1
    Conserved Domains (9) summary
    cd03597
    Location:748 → 874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:454 → 600
    PLN02153; epithiospecifier protein
    PLN02193
    Location:300 → 387
    PLN02193; nitrile-specifier protein
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1013 → 1058
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:521 → 574
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:889 → 938
    PSI; Plexin repeat
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif
    cl19567
    Location:235 → 280
    DSL; Delta serrate ligand

  8. XM_030806624.1 → XP_030662484.1  attractin-like protein 1 isoform X8

    Conserved Domains (7) summary
    PLN02153
    Location:454 → 572
    PLN02153; epithiospecifier protein
    PLN02193
    Location:300 → 387
    PLN02193; nitrile-specifier protein
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    sd00038
    Location:521 → 574
    Kelch; KELCH repeat [structural motif]
    pfam13415
    Location:481 → 529
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif
    cl19567
    Location:235 → 280
    DSL; Delta serrate ligand

  9. XM_030806629.1 → XP_030662489.1  attractin-like protein 1 isoform X9

    Conserved Domains (5) summary
    PHA03098
    Location:316 → 454
    PHA03098; kelch-like protein; Provisional
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    sd00038
    Location:305 → 351
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif
    cl19567
    Location:235 → 280
    DSL; Delta serrate ligand

RNA

  1. XR_004028677.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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