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Chpf Chondroitin polymerizing factor [ Apis mellifera (honey bee) ]

Gene ID: 100579040, updated on 2-Oct-2024

Summary

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Gene symbol
Chpf
Gene description
Chondroitin polymerizing factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB45228
Orthologs
fruit fly all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
6
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG11 NC_037648.1 (14472319..14475344)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG11 NC_007080.3 (12733106..12736132)

Linkage Group LG11 - NC_037648.1Genomic Context describing neighboring genes Neighboring gene evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial Neighboring gene uncharacterized LOC107965224 Neighboring gene ell-associated factor Eaf Neighboring gene uncharacterized LOC726564

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: chondroitin sulfate synthase 2
Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037648.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    14472319..14475344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003250828.4 → XP_003250876.2  LOW QUALITY PROTEIN: chondroitin sulfate synthase 2

    UniProtKB/TrEMBL
    A0A7M7GA29, A0A8B6XV71
    Conserved Domains (1) summary
    pfam05679
    Location:239 → 761
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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