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LOC100570817 lactosylceramide 4-alpha-galactosyltransferase [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100570817, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100570817
Gene description
lactosylceramide 4-alpha-galactosyltransferase
See related
EnsemblRapid:LOC100570817
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
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Genomic context

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See LOC100570817 in Genome Data Viewer
Location:
chromosome: X
Exon count:
4
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) X NC_042493.1 (47850231..47853509)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383744.1 (712923..716179, complement)

Chromosome X - NC_042493.1Genomic Context describing neighboring genes Neighboring gene lethal (2) 37Cb Neighboring gene uncharacterized LOC100569660 Neighboring gene uncharacterized LOC100163835 Neighboring gene uncharacterized LOC100169199

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycosphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 4-alpha-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042493.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    47850231..47853509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003244140.4 → XP_003244188.1  lactosylceramide 4-alpha-galactosyltransferase

    UniProtKB/TrEMBL
    A0A8R1W5N8
    Related
    XP_003244188.1, XM_003244140.4
    Conserved Domains (2) summary
    pfam04572
    Location:224 → 348
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:90 → 196
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials