U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

jmjd1c jumonji domain containing 1C [ Anolis carolinensis (green anole) ]

Gene ID: 100565185, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
jmjd1c
Gene description
jumonji domain containing 1C
See related
Ensembl:ENSACAG00000010214
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See jmjd1c in Genome Data Viewer
Location:
chromosome: 3
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 3 NC_085843.1 (164772234..164930572)
102 previous assembly AnoCar2.0 (GCF_000090745.1) Unplaced Scaffold NW_003338751.1 (2380875..2506311)

Chromosome 3 - NC_085843.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103279476 Neighboring gene receptor accessory protein 3 Neighboring gene uncharacterized LOC134297642 Neighboring gene uncharacterized LOC134297643 Neighboring gene nuclear receptor binding factor 2 Neighboring gene uncharacterized LOC134297644

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable JmjC domain-containing histone demethylation protein 2C

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085843.1 Reference rAnoCar3.1.pri

    Range
    164772234..164930572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062975768.1 → XP_062831838.1  probable JmjC domain-containing histone demethylation protein 2C isoform X3

  2. XM_062975765.1 → XP_062831835.1  probable JmjC domain-containing histone demethylation protein 2C isoform X1

  3. XM_062975766.1 → XP_062831836.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

  4. XM_062975767.1 → XP_062831837.1  probable JmjC domain-containing histone demethylation protein 2C isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.