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atxn2l ataxin 2 like [ Anolis carolinensis (green anole) ]

Gene ID: 100564603, updated on 10-Oct-2024

Summary

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Gene symbol
atxn2l
Gene description
ataxin 2 like
See related
Ensembl:ENSACAG00000005425
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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See atxn2l in Genome Data Viewer
Location:
chromosome: 6
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 6 NC_085846.1 (18101214..18130427, complement)
102 previous assembly AnoCar2.0 (GCF_000090745.1) Unplaced Scaffold NW_003338834.1 (401261..424055, complement)

Chromosome 6 - NC_085846.1Genomic Context describing neighboring genes Neighboring gene rabaptin, RAB GTPase binding effector protein 2 Neighboring gene Tu translation elongation factor, mitochondrial Neighboring gene uncharacterized LOC103280006 Neighboring gene SH2B adaptor protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085846.1 Reference rAnoCar3.1.pri

    Range
    18101214..18130427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062957210.1 → XP_062813280.1  ataxin-2-like protein isoform X1

  2. XM_008117505.3 → XP_008115712.1  ataxin-2-like protein isoform X2

    UniProtKB/TrEMBL
    H9GAA3
    Related
    ENSACAP00000022350.1
    Conserved Domains (3) summary
    pfam06741
    Location:168 → 230
    LsmAD; LsmAD domain
    pfam07145
    Location:554 → 569
    PAM2; Ataxin-2 C-terminal region
    pfam14438
    Location:26 → 95
    SM-ATX; Ataxin 2 SM domain

  3. XM_062957211.1 → XP_062813281.1  ataxin-2-like protein isoform X3

    UniProtKB/TrEMBL
    R4GAP7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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