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gys1 glycogen synthase 1 [ Anolis carolinensis (green anole) ]

Gene ID: 100563034, updated on 18-Sep-2024

Summary

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Gene symbol
gys1
Gene description
glycogen synthase 1
See related
Ensembl:ENSACAG00000004713
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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See gys1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 6 NC_085846.1 (17722649..17759583, complement)
102 previous assembly AnoCar2.0 (GCF_000090745.1) Unplaced Scaffold NW_003338834.1 (45001..78617, complement)

Chromosome 6 - NC_085846.1Genomic Context describing neighboring genes Neighboring gene ferritin heavy chain A Neighboring gene ferritin light chain, oocyte isoform Neighboring gene protein arginine methyltransferase 1 Neighboring gene DNA-directed RNA polymerases I, II, and III subunit RPABC5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen [starch] synthase, muscle
Names
glycogen synthase 1 (muscle)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085846.1 Reference rAnoCar3.1.pri

    Range
    17722649..17759583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062957439.1 → XP_062813509.1  glycogen [starch] synthase, muscle

    UniProtKB/TrEMBL
    H9G9K0

  2. XM_003225232.4 → XP_003225280.1  glycogen [starch] synthase, muscle

    UniProtKB/TrEMBL
    H9G9K0
    Related
    ENSACAP00000004728.2
    Conserved Domains (2) summary
    cd03793
    Location:26 → 615
    GT1_Glycogen_synthase_GSY2_like; Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the ...
    pfam05693
    Location:31 → 657
    Glycogen_syn; Glycogen synthase
Nucleotide Protein
Heading Accession and Version

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