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upf3a UPF3A regulator of nonsense mediated mRNA decay [ Anolis carolinensis (green anole) ]

Gene ID: 100561233, updated on 8-Mar-2024

Summary

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Gene symbol
upf3a
Gene description
UPF3A regulator of nonsense mediated mRNA decay
See related
Ensembl:ENSACAG00000001540
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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See upf3a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 3 NC_085843.1 (118334967..118358617, complement)
102 previous assembly AnoCar2.0 (GCF_000090745.1) 3 NC_014778.1 (106777617..106800143)

Chromosome 3 - NC_085843.1Genomic Context describing neighboring genes Neighboring gene septin 10 Neighboring gene F-box only protein 36 Neighboring gene chromosome alignment maintaining phosphoprotein 1 Neighboring gene uncharacterized LOC134297558 Neighboring gene cell division cycle 16 Neighboring gene CFAP97 domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of nonsense transcripts 3A
Names
UPF3 regulator of nonsense transcripts homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085843.1 Reference rAnoCar3.1.pri

    Range
    118334967..118358617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062975439.1 → XP_062831509.1  regulator of nonsense transcripts 3A isoform X2

  2. XM_062975438.1 → XP_062831508.1  regulator of nonsense transcripts 3A isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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