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parn poly(A)-specific ribonuclease [ Anolis carolinensis (green anole) ]

Gene ID: 100560800, updated on 8-Mar-2024

Summary

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Gene symbol
parn
Gene description
poly(A)-specific ribonuclease
See related
Ensembl:ENSACAG00000004973
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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See parn in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) Unplaced Scaffold NW_026943824.1 (7686516..7710489, complement)
102 previous assembly AnoCar2.0 (GCF_000090745.1) Unplaced Scaffold NW_003339238.1 (113416..131433)

NW_026943824.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103281250 Neighboring gene trichohyalin-like Neighboring gene transfer RNA threonine (anticodon CGU) Neighboring gene enoyl-CoA delta isomerase 1 Neighboring gene deoxyribonuclease-1-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(A)-specific ribonuclease PARN
Names
poly(A)-specific ribonuclease (deadenylation nuclease)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NW_026943824.1 Reference rAnoCar3.1.pri

    Range
    7686516..7710489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003228657.4 → XP_003228705.4  poly(A)-specific ribonuclease PARN

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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