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zcchc17 zinc finger CCHC-type containing 17 [ Anolis carolinensis (green anole) ]

Gene ID: 100559022, updated on 8-Mar-2024

Summary

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Gene symbol
zcchc17
Gene description
zinc finger CCHC-type containing 17
See related
Ensembl:ENSACAG00000000389
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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See zcchc17 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) Unplaced Scaffold NW_026943821.1 (28130432..28136271)
102 previous assembly AnoCar2.0 (GCF_000090745.1) Unplaced Scaffold NW_003339110.1 (162496..167644)

NW_026943821.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium transporting ATPase interacting 1 Neighboring gene small nuclear ribonucleoprotein U5 subunit 40 Neighboring gene fatty acid binding protein 3 Neighboring gene serine incorporator 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCHC domain-containing protein 17
Names
zinc finger, CCHC domain containing 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NW_026943821.1 Reference rAnoCar3.1.pri

    Range
    28130432..28136271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003228021.4 → XP_003228069.1  zinc finger CCHC domain-containing protein 17

    UniProtKB/TrEMBL
    H9G3N5
    Related
    ENSACAP00000000377.2
    Conserved Domains (1) summary
    cd05686
    Location:5 → 78
    S1_pNO40; S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. ...
Nucleotide Protein
Heading Accession and Version

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