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zc3h12b zinc finger CCCH-type containing 12B [ Anolis carolinensis (green anole) ]

Gene ID: 100555362, updated on 3-Apr-2024

Summary

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Gene symbol
zc3h12b
Gene description
zinc finger CCCH-type containing 12B
See related
Ensembl:ENSACAG00000013582
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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See zc3h12b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) Unplaced Scaffold NW_026943823.1 (14228342..14254772, complement)
102 previous assembly AnoCar2.0 (GCF_000090745.1) Unplaced Scaffold NW_003338923.1 (753752..780172, complement)

NW_026943823.1Genomic Context describing neighboring genes Neighboring gene ALG13 UDP-N-acetylglucosaminyltransferase subunit Neighboring gene transient receptor potential cation channel subfamily C member 5 Neighboring gene LAS1 like ribosome biogenesis factor Neighboring gene zinc finger C4H2-type containing Neighboring gene uncharacterized LOC100555557

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ribonuclease ZC3H12B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NW_026943823.1 Reference rAnoCar3.1.pri

    Range
    14228342..14254772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003226413.4 → XP_003226461.1  probable ribonuclease ZC3H12B

    UniProtKB/TrEMBL
    H9GK24
    Conserved Domains (2) summary
    pfam11977
    Location:189 → 345
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
    pfam15027
    Location:96 → 181
    DUF4525; Domain of unknown function (DUF4525)

  2. XM_062964076.1 → XP_062820146.1  probable ribonuclease ZC3H12B

    UniProtKB/TrEMBL
    H9GK24

  3. XM_062964074.1 → XP_062820144.1  probable ribonuclease ZC3H12B

    UniProtKB/TrEMBL
    H9GK24

  4. XM_016996837.2 → XP_016852326.1  probable ribonuclease ZC3H12B

    UniProtKB/TrEMBL
    H9GK24
    Conserved Domains (2) summary
    pfam11977
    Location:189 → 345
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
    pfam15027
    Location:96 → 181
    DUF4525; Domain of unknown function (DUF4525)

  5. XM_016996841.2 → XP_016852330.1  probable ribonuclease ZC3H12B

    UniProtKB/TrEMBL
    H9GK24
    Conserved Domains (2) summary
    pfam11977
    Location:189 → 345
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
    pfam15027
    Location:96 → 181
    DUF4525; Domain of unknown function (DUF4525)

  6. XM_062964077.1 → XP_062820147.1  probable ribonuclease ZC3H12B

    UniProtKB/TrEMBL
    H9GK24

  7. XM_062964075.1 → XP_062820145.1  probable ribonuclease ZC3H12B

    UniProtKB/TrEMBL
    H9GK24

  8. XM_062964073.1 → XP_062820143.1  probable ribonuclease ZC3H12B

    UniProtKB/TrEMBL
    H9GK24
Nucleotide Protein
Heading Accession and Version

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