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LINC00159 long intergenic non-protein coding RNA 159 [ Homo sapiens (human) ]

Gene ID: 100551499, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00159provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 159provided by HGNC
Primary source
HGNC:HGNC:1285
See related
AllianceGenome:HGNC:1285
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C21orf44; NCRNA00159
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
21q22.11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (32080481..32086295, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (30450174..30455981, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (33452794..33458608, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13245 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13246 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13247 Neighboring gene TPT1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:33253321-33253821 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:33280341-33280874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:33284969-33285779 Neighboring gene hormonally up-regulated Neu-associated kinase Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:33303660-33304223 Neighboring gene NANOG hESC enhancer GRCh37_chr21:33315105-33315606 Neighboring gene NANOG hESC enhancer GRCh37_chr21:33346858-33347382 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:33506465-33506966 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18359 Neighboring gene MIS18 kinetochore protein A Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:33650609-33651110 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:33651111-33651610 Neighboring gene MIS18A antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038033.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    BG210590

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    32080481..32086295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    30450174..30455981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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