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EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 [ Meleagris gallopavo (turkey) ]

Gene ID: 100550857, updated on 8-Mar-2024

Summary

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Gene symbol
EDEM3
Gene description
ER degradation enhancing alpha-mannosidase like protein 3
See related
Ensembl:ENSMGAG00000001392
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Orthologs
human mouse all
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Genomic context

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See EDEM3 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
20
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 10 NC_015020.2 (2247980..2275576)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 10 NC_015020.1 (2543160..2571472)

Chromosome 10 - NC_015020.2Genomic Context describing neighboring genes Neighboring gene ring finger protein 2 Neighboring gene protein Niban 1 Neighboring gene T cell receptor delta constant-like Neighboring gene retinol dehydrogenase 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum mannose trimming IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose trimming involved in glycoprotein ERAD pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ER degradation-enhancing alpha-mannosidase-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015020.2 Reference Turkey_5.1 Primary Assembly

    Range
    2247980..2275576
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031554944.1 → XP_031410804.1  ER degradation-enhancing alpha-mannosidase-like protein 3

    UniProtKB/TrEMBL
    G1MRM0
    Related
    ENSMGAP00000000851.2, ENSMGAT00000001498.2
    Conserved Domains (3) summary
    cd02126
    Location:648 → 774
    PA_EDEM3_like; protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I ...
    pfam01532
    Location:43 → 482
    Glyco_hydro_47; Glycosyl hydrolase family 47
    NF000535
    Location:720 → 889
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
Nucleotide Protein
Heading Accession and Version

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