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LOC100547566 poly(rC)-binding protein 3-like [ Meleagris gallopavo (turkey) ]

Gene ID: 100547566, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100547566
Gene description
poly(rC)-binding protein 3-like
See related
Ensembl:ENSMGAG00000006794
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
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Genomic context

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See LOC100547566 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 3 NC_015013.2 (31655578..31711449)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 3 NC_015013.1 (34773548..34821535)

Chromosome 3 - NC_015013.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116216449 Neighboring gene uncharacterized LOC116216450 Neighboring gene uncharacterized LOC109366687 Neighboring gene zinc finger protein 830 Neighboring gene BAG cochaperone 1 Neighboring gene charged multivesicular body protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(rC)-binding protein 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015013.2 Reference Turkey_5.1 Primary Assembly

    Range
    31655578..31711449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010708598.3 → XP_010706900.1  poly(rC)-binding protein 3-like isoform X5

    UniProtKB/TrEMBL
    G1N4T9
    Conserved Domains (2) summary
    cd00105
    Location:273 → 335
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:102 → 166
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  2. XM_010708603.3 → XP_010706905.1  poly(rC)-binding protein 3-like isoform X10

    Conserved Domains (1) summary
    cd02396
    Location:102 → 166
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  3. XM_010708599.3 → XP_010706901.1  poly(rC)-binding protein 3-like isoform X6

    UniProtKB/TrEMBL
    G1N4T9
    Conserved Domains (2) summary
    cd00105
    Location:273 → 335
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:102 → 166
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  4. XM_010708600.3 → XP_010706902.1  poly(rC)-binding protein 3-like isoform X7

    UniProtKB/TrEMBL
    G1N4T9
    Related
    ENSMGAP00000006890.3, ENSMGAT00000007653.3
    Conserved Domains (2) summary
    cd00105
    Location:268 → 330
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:102 → 166
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  5. XM_010708595.3 → XP_010706897.1  poly(rC)-binding protein 3-like isoform X1

    Conserved Domains (2) summary
    cd22519
    Location:96 → 174
    KH-I_PCBP3_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 3 (PCBP3) and similar proteins
    cl00098
    Location:9 → 85
    KH-I; K homology (KH) RNA-binding domain, type I

  6. XM_003204879.4 → XP_003204927.1  poly(rC)-binding protein 3-like isoform X2

    Conserved Domains (2) summary
    cd22519
    Location:96 → 174
    KH-I_PCBP3_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 3 (PCBP3) and similar proteins
    cl00098
    Location:9 → 85
    KH-I; K homology (KH) RNA-binding domain, type I

  7. XM_010708601.3 → XP_010706903.1  poly(rC)-binding protein 3-like isoform X8

    UniProtKB/TrEMBL
    G1N4T9
    Conserved Domains (2) summary
    cd00105
    Location:273 → 335
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:102 → 166
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  8. XM_010708597.3 → XP_010706899.1  poly(rC)-binding protein 3-like isoform X4

    UniProtKB/TrEMBL
    G1N4T9
    Conserved Domains (2) summary
    cd00105
    Location:273 → 335
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:102 → 166
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  9. XM_010708596.3 → XP_010706898.1  poly(rC)-binding protein 3-like isoform X3

    UniProtKB/TrEMBL
    G1N4T9
    Conserved Domains (3) summary
    cd22519
    Location:96 → 174
    KH-I_PCBP3_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 3 (PCBP3) and similar proteins
    cd22522
    Location:264 → 338
    KH-I_PCBP3_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 3 (PCBP3) and similar proteins
    cl00098
    Location:9 → 85
    KH-I; K homology (KH) RNA-binding domain, type I

  10. XM_010708602.3 → XP_010706904.1  poly(rC)-binding protein 3-like isoform X9

    Conserved Domains (1) summary
    cd02396
    Location:102 → 166
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
Nucleotide Protein
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