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GNPDA2 glucosamine-6-phosphate deaminase 2 [ Meleagris gallopavo (turkey) ]

Gene ID: 100546495, updated on 8-Mar-2024

Summary

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Gene symbol
GNPDA2
Gene description
glucosamine-6-phosphate deaminase 2
See related
Ensembl:ENSMGAG00000012115
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Orthologs
human mouse all
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Genomic context

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See GNPDA2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 4 NC_015014.2 (47240727..47249418)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 4 NC_015014.1 (50436975..50443025)

Chromosome 4 - NC_015014.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109367361 Neighboring gene uncharacterized LOC109367362 Neighboring gene GTP binding elongation factor GUF1 Neighboring gene uncharacterized LOC104910787 Neighboring gene Yip1 domain family member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucosamine-6-phosphate deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucosamine-6-phosphate isomerase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015014.2 Reference Turkey_5.1 Primary Assembly

    Range
    47240727..47249418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010710224.3 → XP_010708526.1  glucosamine-6-phosphate isomerase 2

    See identical proteins and their annotated locations for XP_010708526.1

    UniProtKB/TrEMBL
    G1NHQ0
    Conserved Domains (1) summary
    PRK00443
    Location:1 → 258
    nagB; glucosamine-6-phosphate deaminase; Provisional

  2. XM_019614882.2 → XP_019470427.1  glucosamine-6-phosphate isomerase 2

    UniProtKB/TrEMBL
    G1NHQ0
    Related
    ENSMGAP00000012723.1, ENSMGAT00000013620.2
    Conserved Domains (1) summary
    PRK00443
    Location:1 → 258
    nagB; glucosamine-6-phosphate deaminase; Provisional

RNA

  1. XR_002114442.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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