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CHPF2 chondroitin polymerizing factor 2 [ Meleagris gallopavo (turkey) ]

Gene ID: 100544997, updated on 8-Mar-2024

Summary

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Gene symbol
CHPF2
Gene description
chondroitin polymerizing factor 2
See related
Ensembl:ENSMGAG00000010798
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Orthologs
human mouse all
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Genomic context

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See CHPF2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 2 NC_015012.2 (83835382..83839029, complement)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) Unplaced Scaffold NW_003456345.1 (74961..77867)

Chromosome 2 - NC_015012.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116216355 Neighboring gene SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 Neighboring gene uncharacterized LOC109366242 Neighboring gene ATP-binding cassette sub-family F member 2 Neighboring gene late histone H2B.L4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015012.2 Reference Turkey_5.1 Primary Assembly

    Range
    83835382..83839029 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010707775.3 → XP_010706077.1  chondroitin sulfate glucuronyltransferase

    UniProtKB/TrEMBL
    A0A803YRH2
    Related
    ENSMGAP00000034370.1, ENSMGAT00000036312.1
    Conserved Domains (1) summary
    pfam05679
    Location:97 → 599
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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